Data from: Acid secretion by the boring organ of the burrowing giant clam, Tridacna crocea

Version 1.0
Data from: Acid secretion by the boring organ of the burrowing giant clam, Tridacna crocea
Hill, Richard W.; Armstrong, Eric J.; Inaba, Kazuo; Morita, Masaya; Tresguerres, Martin; Stillman, Jonathon H.; Roa, Jinae N.; Kwan, Garfield T., 2018, "Data from: Acid secretion by the boring organ of the burrowing giant clam, Tridacna crocea", https://doi.org/10.5683/SP2/WKLMJV, Borealis, V1
Learn about Data Citation Standards.
Contact Owner Share
Dataset Metrics
38 Downloads
Description
Abstract
The giant clam Tridacna crocea, native to Indo-Pacific coral reefs, is noted for its unique ability to bore fully into coral rock and is a major agent of reef bioerosion. However, T. crocea’s mechanism of boring has remained a mystery despite decades of research. By exploiting a new, two-dimensional pH-sensing technology and manipulating clams to press their presumptive boring tissue (the pedal mantle) against pH-sensing foils, we show that this tissue lowers the pH of surfaces it contacts by more than 2 pH units below seawater pH day and night. Acid secretion is likely mediated by vacuolar-type H+-ATPase, which we demonstrate (by immunofluorescence) is abundant in the pedal mantle outer epithelium. Our discovery of acid secretion solves this decades-old mystery and reveals that, during bioerosion, T. crocea can liberate reef constituents directly to the soluble phase, rather than producing sediment alone as earlier assumed. (2020-06-24)
Usage notes
ME_ST_XX_00001Individual ID: Clam 1 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00006Individual ID: Clam 5 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00011Individual ID: Clam 3 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00013Individual ID: Clam 6 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00018Individual ID: Clam 7 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00021Individual ID: Clam 8 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00026Individual ID: Clam 1 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00034Individual ID: Clam 5 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00040Individual ID: Clam 3 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00042Individual ID: Clam 6 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00044Individual ID: Clam 7 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00049Individual ID: Clam 8 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00031Individual ID: Clam 4 (Day) ; Time: 10 March 2017 14:40ME_ST_XX_00076Individual ID: Clam 4 (Night) ; Time: 10 March 2017 20:45ME_ST_XX_00059Individual ID: Clam 2 (Day) ; Time: 11 March 2017 14:06ME_ST_XX_00061Individual ID: Clam 9 (Day) ; Time: 11 March 2017 14:06ME_ST_XX_00083Individual ID: Clam 9 (Night) ; Time: 11 March 2017 22:24ME_ST_XX_00088Individual ID: Clam 2 (Day) ; Time: 11 March 2017 14:06 (2020-06-24)
Subject Other
Keyword coral reefs, Vacuolar-type H+ATPase, Tridacnid clams, Boring mechanism, bioerosion, Acid secretion, Tridacna crocea
Related Publication Article
Notes

Dryad version number: 1

Version status: submitted

Dryad curation status: Published

Sharing link: https://datadryad.org/stash/share/GRq_5HhgWPHiARfysb85gZMtdxPKC9qn41ygs7lJrAM

Storage size: 29965490

Visibility: public

License/Data Use Agreement

Custom Dataset Terms

Filter by
Group by Folder
Group by Tag
1 to 10 of 19 Files
dryad_88s50.json
Plain Text - 8.0 KB
Published May 19, 2021
0 Downloads
MD5: ad46e61b4bce53a8c58bc537bfef30d2
Original JSON from Dryad
CodeDocumentation
ME_ST_XX_00001.png
ME_ST_XX_00001.png
PNG Image - 1.8 MB
Published May 19, 2021
3 Downloads
MD5: 23457aec5fad4d4f53dbb2714d530b59
Individual ID: Clam 1 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00006.png
ME_ST_XX_00006.png
PNG Image - 1.7 MB
Published May 19, 2021
3 Downloads
MD5: a784d14103ae3985a91c7e5cd260966a
Individual ID: Clam 5 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00011.png
ME_ST_XX_00011.png
PNG Image - 970.0 KB
Published May 19, 2021
4 Downloads
MD5: 1249bf5db0b62da5a6971f6513dff845
Individual ID: Clam 3 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00013.png
ME_ST_XX_00013.png
PNG Image - 1.4 MB
Published May 19, 2021
3 Downloads
MD5: dd66a16da0cb24dd280f4a69af03206b
Individual ID: Clam 6 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00018.png
ME_ST_XX_00018.png
PNG Image - 1.9 MB
Published May 19, 2021
3 Downloads
MD5: a55dda7cc9e9f9895a2f5adfb9152a2e
Individual ID: Clam 7 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00021.png
ME_ST_XX_00021.png
PNG Image - 1.6 MB
Published May 19, 2021
2 Downloads
MD5: eff89afcf0d1eccd1cadfad66e600e7d
Individual ID: Clam 8 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00026.png
ME_ST_XX_00026.png
PNG Image - 1.8 MB
Published May 19, 2021
2 Downloads
MD5: b72cbc1884075f20e6ab423ce2132836
Individual ID: Clam 1 (Night) ; Time: 10 March 2017 20:45
ME_ST_XX_00031.png
ME_ST_XX_00031.png
PNG Image - 1.9 MB
Published May 19, 2021
2 Downloads
MD5: 635bf65dbcbdcc8a5b33446d3e05e03a
Individual ID: Clam 4 (Day) ; Time: 10 March 2017 14:40
ME_ST_XX_00034.png
ME_ST_XX_00034.png
PNG Image - 1.8 MB
Published May 19, 2021
2 Downloads
MD5: 6b547ff781bc0ff38031e7419af9a43c
Individual ID: Clam 5 (Night) ; Time: 10 March 2017 20:45
Edit File

This file has already been deleted (or replaced) in the current version. It may not be edited.

Restrict Access

Restricting limits access to published files. People who want to use the restricted files can request access by default. If you disable request access, you must add information about access to the Terms of Access field.

Learn about restricting files and dataset access in the User Guide.

Enable access request
You must enable request access or add terms of access to restrict file access.
Save Changes
Edit Embargo

The selected file or files have already been published. Contact an administrator to change the embargo date or reason of the file or files.
Delete Files

The file will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Select File(s)

Please select one or more files.

Share Dataset

Share this dataset on your favorite social media networks.

Continue
Dataset Citations

Citations for this dataset are retrieved from Crossref via DataCite using Make Data Count standards. For more information about dataset metrics, please refer to the User Guide.

Sorry, no citations were found.
Restricted Files Selected

The selected file(s) may not be downloaded because you have not been granted access.

Download Options

The files selected are too large to download as a ZIP.

You can select individual files that are below the 4.7 GB download limit from the files table, or use the Data Access API for programmatic access to the files.

Select File(s)

Please select a file or files to be downloaded.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Click Continue to download the files you have access to download.

Ineligible Files Selected

Some file(s) cannot be transferred. (They are restricted, embargoed, or not Globus accessible.)

Click Continue to transfer the elligible files.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Unpublished Dataset Private URL

Private URL can only be used with unpublished versions of datasets.

Unpublished Dataset Private URL

Are you sure you want to disable the Private URL? If you have shared the Private URL with others they will no longer be able to use it to access your unpublished dataset.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Compute

This dataset contains restricted files you may not compute on because you have not been granted access.

Deaccession Dataset

Are you sure you want to deaccession? This is permanent and the selected version(s) will no longer be viewable by the public.

Deaccession Dataset

Are you sure you want to deaccession this dataset? This is permanent an it will no longer be viewable by the public.

Version Differences Details

Please select two versions to view the differences.

Version Differences Details
 
Version:
Last Updated:
Version:
Last Updated:
Select File(s)

Please select a file or files for access request.

Select File(s)

Embargoed files cannot be accessed. Please select an unembargoed file or files for your access request.

Edit Tags

Select existing file tags or create new tags to describe your files. Each file can have more than one tag.

Request Access

  You need to Sign Up or Log In to request access.

Dataset Terms

Please confirm and/or complete the information needed below in order to request access to files in this dataset.

This dataset is made available under the following terms. Please confirm and/or complete the information needed below in order to continue.

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation shown on the dataset page.

Custom Dataset Terms — the following Custom Dataset Terms have been defined for this dataset.

This dataset is made available under a Creative Commons CC0 license with the following additional/modified terms and conditions: CC0 Waiver
Preview Guestbook

Upon downloading files the guestbook asks for the following information.

Account Information

Package File Download

Use the Download URL in a Wget command or a download manager to download this package file. Download via web browser is not recommended. User Guide - Downloading a Dataverse Package via URL

https://borealisdata.ca/api/access/datafile/

Compute Batch
Clear Batch
Dataset Persistent Identifier Change Compute Batch
Compute Batch
Submit for Review

You will not be able to make changes to this dataset while it is in review.

Publish Dataset

Are you sure you want to republish this dataset?

Select if this is a minor or major version update.

Publish Dataset

This dataset cannot be published until UBC Dryad2Dataverse is published by its administrator.

Publish Dataset

This dataset cannot be published until UBC Dryad2Dataverse and UBC Dataverse Collection are published.

Return to Author

Return this dataset to contributor for modification. The reason for return entered below will be sent by email to the author.