Data from: "Transcriptome resources for three hybrid sunflower species (Helianthus anomalus, H. deserticola, H paradoxus)" in Genomic Resources Notes accepted 1 February 2013–31 March 2013

Version 1.0
Rieseberg, Loren H.; Renaut, Sébastien; Rowe, Heather C.; King, Matthew G., 2013, "Data from: "Transcriptome resources for three hybrid sunflower species (Helianthus anomalus, H. deserticola, H paradoxus)" in Genomic Resources Notes accepted 1 February 2013–31 March 2013", https://doi.org/10.5683/SP2/YP2TJ5, Borealis, V1
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Description
Abstract
This article documents the public availability of three transcriptome sequences. These genomic resources were developed for the following species: Helianthus anomalus, Helianthus deserticola and Helianthus paradoxus. (2020-06-24)
Usage notes
snp_table_anomalusList of SNPs for H.anomalus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individualsnp_table_deserticolaList of SNPs for H.deserticola. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individualIlluminaContaminantsList of possible Illumina adaptor contaminants used in read trimming.coverage_per_gene_individualsCoverage (Number of reads aligned) per individuals and per gene.snp_table_paradoxusList of SNPs for H.paradoxus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individual (2020-06-24)
Subject Other
Keyword Helianthus deserticola, Helianthus anomalus, Transcriptomics, Bioinfomatics/Phyloinfomatics, Helianthus paradoxus
Related Publication Article
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Dryad version number: 1

Version status: submitted

Dryad curation status: Published

Sharing link: https://datadryad.org/stash/share/FtJDdfgVZkfb3S2HuA3YRpWBVvlHVFiqo38PIhuWR-c

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coverage_per_gene_individuals.txt
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Published May 19, 2021
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MD5: 44c7b4904f123619f9b4f377758e3edf
Coverage (Number of reads aligned) per individuals and per gene.
Preview "coverage_per_gene_individuals.txt"
dryad_fj594.json
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MD5: 4df4904639d6512a72cb0df96084b52f
Original JSON from Dryad
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IlluminaContaminants.fa
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List of possible Illumina adaptor contaminants used in read trimming.
snp_table_anomalus
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Published May 19, 2021
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MD5: 090124358073c355e72a2fd58fb4a713
List of SNPs for H.anomalus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individual
snp_table_deserticola
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Published May 19, 2021
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MD5: a393d99f46bcc1abc48f755713866e96
List of SNPs for H.deserticola. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individual
snp_table_paradoxus
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Published May 19, 2021
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MD5: 4d191e1ab34ed61f7206a9b040473730
List of SNPs for H.paradoxus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individual
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